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Towards Understanding The Brain

ATLAS AND DATA
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Mouse Single-neuron Projectome
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Macaque Single-cell Spatial Transcriptomics Atlas
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Zebrafish Transcriptomic and Epigenetic Atlas
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Mouse Single-cell Spatial Transcriptomics Atlas
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Mouse Hippocampal Longitudinal Axis
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Macaque Connectivity Matrix
Coming soon
TOOLS
Desktop
GAPR (Gapr accelerates projectome reconstruction) This software has been developed for the automated reconstruction of large-scale single neurons.
BrAVe
Online
Mouse Single-Neuron Clustering This tool integrates some common clustering algorithms to classify neurons based on their morphological characteristics.
BrAVe
Library
NeuronVis NeuronVis is a python SDK package for ION data access, visualization, analysis, including some analyse cases.
BrAVe
Library
Pyswcloader This library is built for single-cell clustering based on neuron morphology and projection analysis.
BrAVe
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HIGHLIGHT
HIPPOCAMPUS
PUBLICATIONS
Single-neuron projectome-guided analysis reveals the neural circuit mechanism underlying endogenous opioid antinociception
Jun 4, 2024
Whole-brain spatial organization of hippocampal single-neuron projectomes
Feb 2, 2024
Single-neuron analysis of axon arbors reveals distinct presynaptic organizations between feedforward and feedback projections
Jan 23, 2024
Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
Jul 12, 2023
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